PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G069166.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 275aa    MW: 29038.6 Da    PI: 7.2667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G069166.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.6e-17106153555
                   AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           GVr ++ +g+++AeIrd + ng  +r+++g+f+t+e Aa  +++a+ +++g
  Sobic.002G069166.1.p 106 GVRKRP-WGKYAAEIRDSTRNG--QRVWIGTFDTPEAAALVYDQAAYSMRG 153
                           9*****.**********44465..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.218103161IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-20104163IPR016177DNA-binding domain
PRINTSPR003671.1E-6104115IPR001471AP2/ERF domain
PfamPF008472.5E-11105153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-25106162IPR001471AP2/ERF domain
SMARTSM003802.3E-29106167IPR001471AP2/ERF domain
CDDcd000181.88E-21106162No hitNo description
PRINTSPR003671.1E-6127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGGAGVVDMH QFSALMGAAS ISKNSTTSGS GCSASSTTFY APAAACLPHH QHGEVMAPAY  60
AFALPAAMMQ MQPDDVVNGW SRRDLKLRQK EKENAAAAEE APALIGVRKR PWGKYAAEIR  120
DSTRNGQRVW IGTFDTPEAA ALVYDQAAYS MRGPAAVRNF PVEHVEESLR ALRLSGGGGG  180
AGDGDGDGDS PVLALKRRHC IRKRLRKNKK IATAGMQGCG HGSAEAREQT AATASHGQKD  240
KITAGAGVLE LEDLGTDYLE ELLALSDQCS EQFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21106163865ATERF1
3gcc_A2e-21106163865ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278839e-71KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.12e-75PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLK4A2J12e-75K4A2J1_SETIT; Uncharacterized protein
STRINGSi033089m7e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-37ethylene response factor 1